Book Chapter
Mohan, Sonali V., Nayakanti, D. S., Sathe, Gajanan, George, Irene A., Gowda, Harsha and Kumar, Prashant (2020). Targeted proteomics as a tool for quantifying urine-based biomarkers. In Rune Matthiesen (Ed.), Mass spectrometry data analysis in proteomics 3rd ed. (pp. 277-295) New York, NY, United States: Humana Press. doi:10.1007/978-1-4939-9744-2_12
Journal Articles
Rothnagel, Joseph, Gowda, Harsha and Menschaert, Gerben (2022). Editorial: sORF Encoded Peptides in Health and Disease. Frontiers in Genetics, 13 878014, 878014. doi: 10.3389/fgene.2022.878014
Divate, Mayur, Tyagi, Aayush, Richard, Derek J., Prasad, Prathosh A., Gowda, Harsha and Nagaraj, Shivashankar H. (2022). Deep learning-based pan-cancer classification model reveals tissue-of-origin specific gene expression signatures. Cancers, 14 (5) 1185, 1-16. doi: 10.3390/cancers14051185
Thakur, Suman S., Gowda, Harsha, Mani, D. R. and Chatterjee, Bhaswati (2021). Editorial: Proteomics and its applications in cancer. Frontiers in Oncology, 11 772811, 772811. doi: 10.3389/fonc.2021.772811
Periasamy, Parthiban, Rajandran, Sureka, Ziegman, Rebekah, Casey, Mika, Nakamura, Kyohei, Kore, Hitesh, Datta, Keshava and Gowda, Harsha (2021). A simple organic solvent precipitation method to improve detection of low molecular weight proteins. Proteomics, 21 (19) 2100152, 1-6. doi: 10.1002/pmic.202100152
Datta, Keshava K., Periasamy, Parthiban, Mohan, Sonali V., Ziegman, Rebekah and Gowda, Harsha (2021). Temporal quantitative proteomics reveals proteomic and phosphoproteomic alterations associated with adaptive response to hypoxia in melanoma cells. Cancers, 13 (9) 2175, 2175. doi: 10.3390/cancers13092175
Mohan, Sonali V., Datta, Keshava K., Ziegman, Rebekah, Smith, Corey and Gowda, Harsha (2021). Protocol for purification and identification of MHC class I immunopeptidome from cancer cell lines. STAR Protocols, 2 (1) 100385, 1-14. doi: 10.1016/j.xpro.2021.100385
Patil, Shankargouda, Rajagopalan, Pavithra, Patel, Krishna, Subbannayya, Tejaswini, Babu, Niraj, Mohan, Sonali V., Advani, Jayshree, Sathe, Gajanan, Bhandi, Shilpa, Solanki, Hitendra S., Sidransky, David, Chatterjee, Aditi, Gowda, Harsha and Ferrari, Marco (2019). Chronic shisha exposure alters phosphoproteome of oral keratinocytes. Journal of Cell Communication and Signaling, 13 (3), 281-289. doi: 10.1007/s12079-019-00528-4
Patil, Shankargouda, Babu, Niraj, Subbannayya, Tejaswini, Mohan, Sonali, Sathe, Gajanan, Solanki, Hitendra S., Rajagopalan, Pavithra, Patel, Krishna, Advani, Jayshree, Bhandi, Shilpa, Sidransky, David, Chatterjee, Aditi, Gowda, Harsha and Ferrari, Marco (2019). Secretome analysis of oral keratinocytes chronically exposed to shisha. Cancer Biomarkers, 25 (1), 29-41. doi: 10.3233/CBM-182099
Patil, Shankargouda, Subbannayya, Tejaswini, Mohan, Sonali V., Babu, Niraj, Advani, Jayshree, Sathe, Gajanan, Rajagopalan, Pavithra, Patel, Krishna, Bhandi, Shilpa, Solanki, Hitendra, Sidransky, David, Gowda, Harsha, Chatterjee, Aditi and Ferrari, Marco (2019). Proteomic changes in oral keratinocytes chronically exposed to shisha (Water Pipe). OMICS: A Journal of Integrative Biology , 23 (2), 86-97. doi: 10.1089/omi.2018.0173
Bhat, Firdous A., Advani, Jayshree, Khan, Aafaque Ahmad, Mohan, Sonali, Pal, Arnab, Gowda, Harsha, Chakrabarti, Prantar, Prasad, T. S. Keshava and Chatterjee, Aditi (2018). A network map of thrombopoietin signaling. Journal of Cell Communication and Signaling, 12 (4), 737-743. doi: 10.1007/s12079-018-0480-4
Babu, Niraj, Mohan, Sonali, Nanjappa, Vishalakshi, Chavan, Sandip, Advani, Jayshree, Khan, Aafaque Ahmed, Renuse, Santosh, Radhakrishnan, Aneesha, Prasad, T. S. Keshava, Kumar, Rekha V., Ray, Jay Gopal, Biswas, Manjusha, Thiyagarajan, Saravanan, Califano, Joseph A., Sidransky, David, Gowda, Harsha and Chatterjee, Aditi (2018). Identification of potential biomarkers of head and neck squamous cell carcinoma using iTRAQ based quantitative proteomic approach. Data in Brief, 19, 1124-1130. doi: 10.1016/j.dib.2018.05.100
Mir, Sartaj Ahmad, Rajagopalan, Pavithra, Jain, Anldt P., Khan, Aafaque Ahmad, Datta, Keshava K., Mohan, Sonali V., Lateef, Syed Salman, Sahasrabuddhe, Nandini, Somani, B. L., Prasad, T. S. Keshava, Chatterjee, Aditi, Kumar, K. V. Veerendra, VijayaKumar, M., Kumar, Rekha V., Gundimeda, Seetaramanjaneyutu, Pandey, Akhilesh and Gowda, Harsha (2015). LC-MS-based serum metabolomic analysis reveals dysregulation of phosphatidylcholines in esophageal squamous cell carcinoma. Journal of Proteomics, 127, 96-102. doi: 10.1016/j.jprot.2015.05.013